Quality control of Utermöhl-based phytoplankton counting and biovolume estimates—an easy task or a Gordian knot?

The most suitable way for standardizing biovolume based assemblage analysis using the Utermöhl technique for counting combined with biomass conversion has not yet been found even though this method has been successfully used in plankton studies for many years. Due to the complexity of the approach easily applicable steps to initially meet primary standard end point or target counts for intra-laboratory standardization tested here seem promising. Examples from count validation and biometric data from the large datasets of three laboratories are given. The first two examples initially intended to quantify the taxon specific scatter of counts by (A) using identical replica of field samples combined with a half-chamber count (scan of every second transect) and the 30 random field approach, respectively, and (B) the replication of transect counts in one sample. Both examples identified relatively low minimum count thresholds to delimit counting errors for single cell counts. The third example identifies shape variability and allometric relationships of the main axes and shows a way to improve taxon specific biomass estimates with special reference to cell thickness. However improved precision of quantitative phytoplankton analysis requires optimization of combined counting strategy and biovolume assessment methods.     

An X-ray spectrum estimation method from transmission measurement combined with scatter correction

PurposeConventional x-ray spectrum estimation methods from transmission measurement often lead to inaccurate results when extensive x-ray scatter is present in the measured projection. This study aims to apply the weighted L1-norm scatter correction algorithm in spectrum estimation for reducing residual differences between the estimated and true spectrum.MethodThe scatter correction algorithm is based on a simple radiographic scattering model where the intensity of scattered x-ray is directly estimated from a transmission measurement. Then, the scatter-corrected measurement is used for the spectrum estimation method that consists of deciding the weights of predefined spectra and representing the spectrum as a linear combination of the predefined spectra with the weights. The performances of the estimation method combined with scatter correction are evaluated on both simulated and experimental data.ResultsThe results show that the estimated spectra using the scatter-corrected projection nearly match the true spectra. The normalized-root-mean-square-error and the mean energy difference between the estimated spectra and corresponding true spectra are reduced from 5.8% and 1.33 keV without the scatter correction to 3.2% and 0.73 keV with the scatter correction for both simulation and experimental data, respectively.ConclusionsThe proposed method is more accurate for the acquisition of x-ray spectrum than the estimation method without scatter correction and the spectrum can be successfully estimated even the materials of the filters and their thicknesses are unknown. The proposed method has the potential to be used in several diagnostic x-ray imaging applications.     

Impact of Cell-surface Antigen Expression on Target Engagement and Function of an Epidermal Growth Factor Receptor × c-MET Bispecific Antibody

The efficacy of engaging multiple drug targets using bispecific antibodies (BsAbs) is affected by the relative cell-surface protein levels of the respective targets. In this work, the receptor density values were correlated to the in vitro activity of a BsAb (JNJ-61186372) targeting epidermal growth factor receptor (EGFR) and hepatocyte growth factor receptor (c-MET). Simultaneous binding of the BsAb to both receptors was confirmed in vitro. By using controlled Fab-arm exchange, a set of BsAbs targeting EGFR and c-MET was generated to establish an accurate receptor quantitation of a panel of lung and gastric cancer cell lines expressing heterogeneous levels of EGFR and c-MET. EGFR and c-MET receptor density levels were correlated to the respective gene expression levels as well as to the respective receptor phosphorylation inhibition values. We observed a bias in BsAb binding toward the more highly expressed of the two receptors, EGFR or c-MET, which resulted in the enhanced in vitro potency of JNJ-61186372 against the less highly expressed target. On the basis of these observations, we propose an avidity model of how JNJ-61186372 engages EGFR and c-MET with potentially broad implications for bispecific drug efficacy and design.     

Spacing Behavior of a Non‐Larder‐Hoarding Tamiasciurus: A Study of Mearns's Squirrels in Xeric Coniferous Forests

In ecosystems with seasonal fluctuations in food supply many species use two strategies to store food: larder hoarding and scatter hoarding. However, because species at different geographic locations may experience distinct environmental conditions, differences in hoarding behavior may occur. Tree squirrels in the genus Tamiasciurus display variation in hoarding behavior. Whereas red (Tamiasciurus hudsonicus) and Douglas's (Tamiasciurus douglasii) squirrels in mesic coniferous forests defend territories centered around larder hoards maintaining non‐overlapping home ranges, red squirrels in deciduous forests defend small scatter‐hoarded caches of cones maintaining overlapping home ranges. As in other rodent species, variation in hoarding behavior appears to influence the spacing behavior of red and Douglas's squirrels. In contrast, Mearns's squirrels (Tamiasciurus mearnsi) in xeric coniferous forests neither rely on larder hoards nor appear to display territorial behavior. Unfortunately, little is known about the ecology of this southernmost Tamiasciurus. Using radiotelemetry, we estimated home‐range size, overlap, and maximum distance traveled from nest to examine the spacing behavior of Mearns's squirrels. Similar to scatter‐hoarding rodents, maximum distance traveled from nest was greater for males during mating season, whereas those of females were similar year round. Although no seasonal differences were detected, male home ranges were three times larger during mating season, whereas those of females were smaller and displayed a minor variation between seasons. Home ranges were overlapped year round but contrary to our expectations, overlap was greater during mating season for both sexes, with no detectable relationship between male home‐range size and the number of females overlapped during mating season. Overall, the results appear to support our hypothesis that in the absence of larder hoards, the spacing behavior of Mearns's squirrels should be different from larder‐hoarding congeners and more similar to scatter‐hoarding rodents.     

Climate change and perishable food hoards of an avian predator: Is the freezer still working?

Changing climate can modify predator–prey interactions and induce declines or local extinctions of species due to reductions in food availability. Species hoarding perishable food for overwinter survival, like predators, are predicted to be particularly susceptible to increasing temperatures. We analysed the influence of autumn and winter weather, and abundance of main prey (voles), on the food‐hoarding behaviour of a generalist predator, the Eurasian pygmy owl (Glaucidium passerinum), across 16 years in Finland. Fewer freeze–thaw events in early autumn delayed the initiation of food hoarding. Pygmy owls consumed more hoarded food with more frequent freeze–thaw events and deeper snow cover in autumn and in winter, and lower precipitation in winter. In autumn, the rotting of food hoards increased with precipitation. Hoards already present in early autumn were much more likely to rot than the ones initiated in late autumn. Rotten food hoards were used more in years of low food abundance than in years of high food abundance. Having rotten food hoards in autumn resulted in a lower future recapture probability of female owls. These results indicate that pygmy owls might be partly able to adapt to climate change by delaying food hoarding, but changes in the snow cover, precipitation and frequency of freeze–thaw events might impair their foraging and ultimately decrease local overwinter survival. Long‐term trends and future predictions, therefore, suggest that impacts of climate change on wintering food‐hoarding species could be substantial, because their ‘freezers’ may no longer work properly. Altered usability and poorer quality of hoarded food may further modify the foraging needs of food‐hoarding predators and thus their overall predation pressure on prey species. This raises concerns about the impacts of climate change on boreal food webs, in which ecological interactions have evolved under cold winter conditions.     

植物大年结实及其与动物贮食行为之间的关系

大年结实(mast seeding)是多生年植物种群周期性同步大量繁殖的一种自然现象。大年结实作为植物适应环境条件、提高繁殖能力的一种策略而备受关注, 但其驱动机制和进化意义尚存在较大争议。在依赖动物扩散种子的植物中, 大年结实被认为是一种调控动物贮食行为、提高种子扩散效率, 并最终增加繁殖成功率的一种策略; 动物介导的植物间互作可能是促进植物共存的进化驱动力。本文简要梳理了大年结实现象的各种假说, 提出了一个包括气候、资源、动植物互作的理解大年结实机制的概念框架, 并着重讨论了大年结实和动物贮食行为之间的关系及其进化和生态意义。建议未来研究需要借助长期生态监测和分子生物学方法, 揭示植物大年结实与动物贮食行为之间的生态与进化过程。     

长爪沙鼠的贮食行为与其个性和代谢水平之间的关系

贮食行为是动物应对食物资源的季节性和不可预测性变化的一种适应性生存策略。在群居性贮食动物中,同胎个体常表现出不同的贮食水平,而关于贮食行为与动物的个性和代谢水平之间的关系尚缺乏研究。本文以长爪沙鼠（Meriones unguiculatus）为对象,在筛选出具有高贮食和低贮食行为特征个体的基础上,比较了两组动物的个性特征（勇敢行为和探索能力）、静止代谢率、血清甲状腺激素水平、贮食期间的运动距离和贮食后的平均每日代谢率等。结果发现：高、低贮食长爪沙鼠的数量各占49%（22/45）和47%（21/45）,两组动物之间的个性特征、静止代谢率和血清甲状腺激素均没有显著差异。在贮食期间高贮食个体的运动距离显著高于低贮食个体,且在停止贮食后,高贮食个体的平均每日代谢率显著低于低贮食个体。这些结果表明,在室内条件下,长爪沙鼠的贮食量高低与个性和静止代谢率无关,但高贮食个体会在停止贮食后降低其总能量消耗,以补偿贮食过程中的高能量代价。     

鼠类对栓皮栎和锥栗种子的贮藏:验证高单宁假说

种子中的单宁影响鼠类的取食和贮藏策略。高单宁假说认为鼠类倾向于优先贮藏单宁含量高的种子、取食单宁含量低的种子。同域分布的鼠类对种子的取食和贮藏选择是否符合高单宁假说的预测尚缺乏足够的实验证据。本研究通过围栏实验研究了四川都江堰地区亚热带常绿阔叶林中的小泡巨鼠（Leopoldamys edwardsi）、针毛鼠（Niveventer fulvescens）、北社鼠（N.confucianus）、高山姬鼠（Apodemus chevrieri）、中华姬鼠（A.draco）对单宁含量高的栓皮栎（Quercus variabilis）种子和单宁含量低的锥栗（Castanea henryi）种子的取食和贮藏偏好,旨在进一步验证高单宁假说。结果表明：（1）5种鼠均偏好取食锥栗种子,很少取食或不取食栓皮栎种子;（2）仅具集中贮藏习性的针毛鼠和北社鼠偏好集中贮藏锥栗种子;兼具集中和分散贮藏习性的小泡巨鼠和高山姬鼠也倾向于贮藏锥栗种子;（3）兼具集中和分散贮藏习性的中华姬鼠偏好分散贮藏栓皮栎种子,集中贮藏锥栗种子。研究结果并不完全支持高单宁假说,表明同域分布的鼠类对种子取食和贮藏偏好表现出种间分化,高单宁假说在同域分布鼠类中可能不具有普遍性。